MassSorter: peptide mass fingerprinting data analysis

Ingvar Eidhammer; Harald Barsnes; Svein-Ole Mikalsen

doi:https://pubmed.ncbi.nlm.nih.gov/18592191/

MassSorter: peptide mass fingerprinting data analysis

Ingvar Eidhammer, Harald Barsnes, Svein-Ole Mikalsen

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Abstract

MassSorter is a software tool that sorts, systemizes, and analyzes data from peptide mass fingerprinting (PMF) experiments on proteins with known amino acid sequences. Several experiments can be simultaneously analyzed for sequence coverage and posttranslational modifications occurring during sample handling, induced chemical modifications, and unexpected cleavages. Experimental m/z values are compared with m/z values from an in silico digestion, taking modifications into account. Filters can be defined by users for marking autolytic protease peaks and other contaminating peaks. MassSorter functions as a database of all the detected peptides. It includes tools for visualization of the results, such
as sequence coverage, accuracy plots, statistics, and 3D models.

Original language	English
Title of host publication	Methods in Molecular Biology
Subtitle of host publication	Functional Proteomics - Methods and Protocols
Editors	Julie D. Thompson, Christine Schaeffer-Reiss, Marius Ueffing
Publisher	Humana Press / Springer Science Media
Chapter	23
Pages	345-360
Number of pages	16
Volume	484
ISBN (Print)	978-1-58829-971-0
DOIs	https://doi.org/https://pubmed.ncbi.nlm.nih.gov/18592191/
Publication status	Published - 2008
Externally published	Yes

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Cite this

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MassSorter: peptide mass fingerprinting data analysis. / Eidhammer, Ingvar; Barsnes, Harald; Mikalsen, Svein-Ole.
Methods in Molecular Biology: Functional Proteomics - Methods and Protocols. ed. / Julie D. Thompson; Christine Schaeffer-Reiss; Marius Ueffing. Vol. 484 Humana Press / Springer Science Media, 2008. p. 345-360.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

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AU - Barsnes, Harald

AU - Mikalsen, Svein-Ole

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ER -

MassSorter: peptide mass fingerprinting data analysis

Abstract

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